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    <title>Sergey a Shmakov | Laboratory of AI in Evolutionary Genomics and Engineering Biology</title>
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    <description>Sergey a Shmakov</description>
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      <title>A Unique Type V CRISPR-Cas System Encoded by a Group of Thermus Viruses</title>
      <link>https://aigen.bio.msu.ru:1313/publication/trofimova-2026-unique/</link>
      <pubDate>Thu, 01 Jan 2026 00:00:00 +0000</pubDate>
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      <title>An updated evolutionary classification of CRISPR--Cas systems including rare variants</title>
      <link>https://aigen.bio.msu.ru:1313/publication/makarova-2025-updated/</link>
      <pubDate>Wed, 01 Jan 2025 00:00:00 +0000</pubDate>
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      <title>Reprogrammable RNA-targeting CRISPR systems evolved from RNA toxin-antitoxins</title>
      <link>https://aigen.bio.msu.ru:1313/publication/zilberzwige-2025-reprogrammable/</link>
      <pubDate>Wed, 01 Jan 2025 00:00:00 +0000</pubDate>
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      <title>Diversity, evolution, and classification of the RNA-guided nucleases TnpB and Cas12</title>
      <link>https://aigen.bio.msu.ru:1313/publication/altae-2023-diversity/</link>
      <pubDate>Sun, 01 Jan 2023 00:00:00 +0000</pubDate>
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      <title>Widespread CRISPR-derived RNA regulatory elements in CRISPR-Cas systems</title>
      <link>https://aigen.bio.msu.ru:1313/publication/shmakov-2023-widespread/</link>
      <pubDate>Sun, 01 Jan 2023 00:00:00 +0000</pubDate>
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      <title>CRISPRidentify: identification of CRISPR arrays using machine learning approach</title>
      <link>https://aigen.bio.msu.ru:1313/publication/mitrofanov-2021-crispridentify/</link>
      <pubDate>Fri, 01 Jan 2021 00:00:00 +0000</pubDate>
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      <title>Evolution of type IV CRISPR-Cas systems: insights from CRISPR loci in integrative conjugative elements of Acidithiobacillia</title>
      <link>https://aigen.bio.msu.ru:1313/publication/moya-2021-evolution/</link>
      <pubDate>Fri, 01 Jan 2021 00:00:00 +0000</pubDate>
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      <title>Toxin-antitoxin RNA pairs safeguard CRISPR-Cas systems</title>
      <link>https://aigen.bio.msu.ru:1313/publication/li-2021-toxin/</link>
      <pubDate>Fri, 01 Jan 2021 00:00:00 +0000</pubDate>
      <guid>https://aigen.bio.msu.ru:1313/publication/li-2021-toxin/</guid>
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      <title>CRISPR arrays away from cas genes</title>
      <link>https://aigen.bio.msu.ru:1313/publication/shmakov-2020-crispr/</link>
      <pubDate>Wed, 01 Jan 2020 00:00:00 +0000</pubDate>
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      <title>Evolutionary classification of CRISPR--Cas systems: a burst of class 2 and derived variants</title>
      <link>https://aigen.bio.msu.ru:1313/publication/makarova-2020-evolutionary/</link>
      <pubDate>Wed, 01 Jan 2020 00:00:00 +0000</pubDate>
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      <title>Machine-learning approach expands the repertoire of anti-CRISPR protein families</title>
      <link>https://aigen.bio.msu.ru:1313/publication/gussow-2020-machine/</link>
      <pubDate>Wed, 01 Jan 2020 00:00:00 +0000</pubDate>
      <guid>https://aigen.bio.msu.ru:1313/publication/gussow-2020-machine/</guid>
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      <title>Mapping CRISPR spaceromes reveals vast host-specific viromes of prokaryotes</title>
      <link>https://aigen.bio.msu.ru:1313/publication/shmakov-2020-mapping/</link>
      <pubDate>Wed, 01 Jan 2020 00:00:00 +0000</pubDate>
      <guid>https://aigen.bio.msu.ru:1313/publication/shmakov-2020-mapping/</guid>
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      <title>Unprecedented diversity of unique CRISPR-Cas-related systems and Cas1 homologs in Asgard archaea</title>
      <link>https://aigen.bio.msu.ru:1313/publication/makarova-2020-unprecedented/</link>
      <pubDate>Wed, 01 Jan 2020 00:00:00 +0000</pubDate>
      <guid>https://aigen.bio.msu.ru:1313/publication/makarova-2020-unprecedented/</guid>
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      <title>Vast diversity of anti-CRISPR proteins predicted with a machine-learning approach</title>
      <link>https://aigen.bio.msu.ru:1313/publication/gussow-2020-vast/</link>
      <pubDate>Wed, 01 Jan 2020 00:00:00 +0000</pubDate>
      <guid>https://aigen.bio.msu.ru:1313/publication/gussow-2020-vast/</guid>
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      <title>Comparative genomics and evolution of trans-activating RNAs in Class 2 CRISPR-Cas systems</title>
      <link>https://aigen.bio.msu.ru:1313/publication/faure-2019-comparative/</link>
      <pubDate>Tue, 01 Jan 2019 00:00:00 +0000</pubDate>
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      <title>CRISPR--Cas in mobile genetic elements: counter-defence and beyond</title>
      <link>https://aigen.bio.msu.ru:1313/publication/faure-2019-crispr/</link>
      <pubDate>Tue, 01 Jan 2019 00:00:00 +0000</pubDate>
      <guid>https://aigen.bio.msu.ru:1313/publication/faure-2019-crispr/</guid>
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    <item>
      <title>Systematic prediction of functionally linked genes in bacterial and archaeal genomes</title>
      <link>https://aigen.bio.msu.ru:1313/publication/shmakov-2019-systematic/</link>
      <pubDate>Tue, 01 Jan 2019 00:00:00 +0000</pubDate>
      <guid>https://aigen.bio.msu.ru:1313/publication/shmakov-2019-systematic/</guid>
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    <item>
      <title>Systematic prediction of genes functionally linked to CRISPR-Cas systems by gene neighborhood analysis</title>
      <link>https://aigen.bio.msu.ru:1313/publication/shmakov-2018-systematic/</link>
      <pubDate>Mon, 01 Jan 2018 00:00:00 +0000</pubDate>
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      <title>Towards comprehensive characterization of CRISPR-linked genes</title>
      <link>https://aigen.bio.msu.ru:1313/publication/shmakov-2018-towards/</link>
      <pubDate>Mon, 01 Jan 2018 00:00:00 +0000</pubDate>
      <guid>https://aigen.bio.msu.ru:1313/publication/shmakov-2018-towards/</guid>
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      <title>The CRISPR spacer space is dominated by sequences from species-specific mobilomes</title>
      <link>https://aigen.bio.msu.ru:1313/publication/shmakov-2017-crispr/</link>
      <pubDate>Sun, 01 Jan 2017 00:00:00 +0000</pubDate>
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